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Below,an RNA molecule is being transcribed from a strand of DNA.Indicate the 5' and 3' ends of the RNA molecule and of the strand of DNA that is complementary to the RNA molecule.In which direction is synthesis occurring? Below,an RNA molecule is being transcribed from a strand of DNA.Indicate the 5' and 3' ends of the RNA molecule and of the strand of DNA that is complementary to the RNA molecule.In which direction is synthesis occurring?

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Describe the mechanistic difference that distinguishes the splicing of group I introns from that of group II introns.

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In the group I introns,the initial break...

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Which of these polymerases does not require a template?


A) RNA pol I
B) RNA pol II
C) Reverse transcriptase
D) Polyadenylate polymerase
E) RNA replicase

F) C) and D)
G) B) and D)

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Describe the sequence of events in the initiation of transcription by E.coli RNA polymerase.

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The core enzyme plus blured image subunit,called hol...

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The excision (splicing) of many group I introns requires,in addition to the primary transcript RNA:


A) a cytosine nucleoside or nucleotide and a protein enzyme.
B) a guanine nucleoside or nucleotide (only) .
C) a protein enzyme only.
D) a small nuclear RNA and a protein enzyme.
E) ATP,NAD,and a protein enzyme.

F) B) and D)
G) A) and D)

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Which of the following is not a post-transcriptional modification in mRNA or tRNA?


A) 4-thiouridine
B) Pseudouridine
C) Dihydrouridine
D) Ribouridine
E) Ribothymidine

F) A) and B)
G) A) and C)

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"Footprinting," or DNase protection,is a technique used to identify:


A) a region of DNA that has been damaged by mutation.
B) E) coli cells that contain a desired,cloned piece of DNA.
C) the position of a particular gene of a chromosome.
D) the position of internally double-stranded regions in a single-stranded DNA molecule.
E) the specific binding site of a repressor,polymerase,or other protein on the DNA.

F) A) and E)
G) B) and E)

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A branched ("lariat") structure is formed during:


A) attachment of a 5' cap to mRNA.
B) attachment of poly(A) tails to mRNA.
C) processing of preribosomal RNA.
D) splicing of all classes of introns.
E) splicing of group II introns.

F) A) and E)
G) All of the above

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In a ρ\rho -independent terminator,there is a palindrome rich in G \equiv C base pairs,followed by 8-10 uridine residues.Explain how each of the following changes might affect terminator function: (a)substitution of cytidines for the 8-10 uridines; (b)mutations in the palindrome that decrease its G \equiv C content; (c)elimination of half of the palindromic sequence.

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(a)This substitution would decrease term...

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Define ribozymes and briefly describe the structure and function of two ribozymes.

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Ribozymes are enzymes that consist in pa...

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RNA polymerase from E.coli (core enzyme alone) has all of the following properties except that it:


A) can extend an RNA chain and initiate a new chain.
B) is required for the synthesis of mRNA,rRNA,and tRNA in E.coli.
C) produces an RNA polymer that begins with a 5'-triphosphate.
D) recognizes specific start signals in DNA.
E) requires all four ribonucleoside triphosphates and a DNA template.

F) B) and E)
G) A) and B)

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Describe briefly the process of initiation by eukaryotic RNA polymerase.

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One transcription factor (TBP)binds spec...

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After binding by E.coli RNA polymerase,the correct order of events for transcription initiation is:


A) closed complex formation,open complex formation,promoter clearance,start of RNA synthesis.
B) closed complex formation,open complex formation,start of RNA synthesis,promoter clearance.
C) open complex formation,closed complex formation,start of RNA synthesis,promoter clearance.
D) start of RNA synthesis,closed complex formation,open complex formation,promoter clearance.
E) start of RNA synthesis,open complex formation,closed complex formation,promoter clearance.

F) A) and D)
G) C) and D)

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Which of the following is not part of miRNA formation?


A) Pri-miRNA
B) Pre-miRNA
C) Dicer
D) RISC
E) Pseudouridine

F) A) and E)
G) A) and B)

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In 1989,Sidney Altman won a Nobel Prize for his work on RNase P.In no more than three sentences,describe the function of RNase P,as well as the unusual characteristic of this enzyme that made Altman's work so important.

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RNase P catalyzes the removal ...

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Splicing of introns in nuclear mRNA primary transcripts requires:


A) a guanine nucleoside or nucleotide.
B) endoribonucleases.
C) polynucleotide phosphorylase.
D) RNA polymerase II.
E) small nuclear ribonucleoproteins (snRNPs) .

F) None of the above
G) B) and E)

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List one basic property that distinguishes RNA polymerases from DNA polymerases,and list one basic property they share.

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Among the distinguishing characteristics...

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Which of the following is not usually essential for the catalytic activity of ribozymes?


A) Correct base pairing
B) Correct base sequence
C) Correct interaction with protein
D) Correct secondary structure
E) Correct three-dimensional structure

F) A) and B)
G) C) and D)

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